Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGQKAWVNIGKTEFILLLVVGILTIINVLTADGEKRTFHSPKKKNINHLTLYDCVSPEVQNSINETGRVTNFF
1Y00 Chain:A ((1-61))
-----MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR--------EEIYQRIQAEKSQQSSY
General information:
TITO was launched using:
RESULT:
Template:
1Y00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5568 for 290 contacts (-19.2/contact) +
2D Compatibility (PS) -6434 + (NN) 275 + (LL) 1064
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -12113.0 ( -41.77 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_1Y00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y00-query.scw
PDB file :
Tito_Scwrl_1Y00.pdb
: