Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKKLKWLSFLLGFIILLFLFKYQFSNNDSWKPWSLPLSGKIIYLDPGHGGPDGGAVGG--KLLEKDVTLEVAFRVRDYLQE-QGALVIMTRESDTDLAPEGTKGYSRRKAEDLRQRVKLINHSEAELYISIHLNAIPS-QKWSGAQSFYYGKY-AENEKVAKYIQDELRRNLE-NTTRKAKRIHGIYLMQNVTKPGALIEVGFLSNPSEATLLGKPKYQDKVASSIYKGILRYFTEKGDPPE
4RN7 Chain:A ((1-186))
-------------------------------------SNAYTVFIDPGHGGNDKGTESKTSNRYEKDLNLQIAKKLANKLSKQKDIQVVVSRTDDTYI--------------SLKDRAILANNSSADVLVSIHLNAEKNGNTATGIETWYRNKATDGSKELAQTVQSTIVSYVKVRDRGIVEN--NFEVLRESNMPAILIECGFLTTPSEEQKIINEKYQDQLAEGIVQGVLSYLDSKG----
General information:
TITO was launched using:
RESULT:
Template:
4RN7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75093 for 1527 contacts (-49.2/contact) +
2D Compatibility (PS) -19415 + (NN) -9227 + (LL) 3436
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -113499.0 ( -74.33 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_4RN7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RN7-query.scw
PDB file :
Tito_Scwrl_4RN7.pdb
: