Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQDISLSFYKPEHLPELQSFTL-TNDDKRFTSLPKEVLSQAL-GIQDRYPVVIL-K-DDLPVGFFILHASKETLASYSNNPFALLLSSLSLTAVHHGKGYAKKAMLLLPAFVSGYFPWCDEIILAVNHLNIRAKHLYMKSGFLDKGRRRIG-PLGEQLILHHFL
3LOD Chain:A ((-1-151))
--AMYTITDIAPTDAEFIALIAALDAWQET---------LDLSQLPPQTVIALAIRSPQGEAVGCGAIVLS-EE--------GFGEMKRVYIDPQHRGQQLGEKLLAALEAKARQR--DCHTLRLETGIHQHAAIALYTRNGYQTRCAFAPYQPDPLSVFMEKPL
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105687 for 967 contacts (-109.3/contact) +
2D Compatibility (PS) -14886 + (NN) -5142 + (LL) 1100
1D Compatibility (HY) 800 + (ID) 900
Total energy: -124715.0 ( -128.97 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: