Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTWHEVNDVIVITLPEIFDMNANLGYLTREKNECMYEIENNIITKVIAIGEIRSLVQVSVIN-NKQMIVQFLNDSRPVEQWKREEIVKYIHEWFDLDNDLTPFYEMAKADPLLKMPARKFYGLRVIGIPDLFEALCWGVLGQQINLAFAYSLKKQFVEAFGDSIEWNGKKYWVFPPYERIARLTPTDLADIKMTVKKSEYIIGIARLMASGELSREKLMKMNFKDAEKNLIKIRGIGPWTANYVLMRCLRFPTAFPIDDVGLIHSIKILRNMNRKPTKDEILEISVPWKEWQSYATFYLWRVLY |
1MPG Chain:A ((1-275)) | --------MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTAIPDIARHTLHINLSA-GL---EPVAAECLAKMSRLFDLQCNPQIV------NGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD-FPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTI--PGDVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFP---G----MTPAQIRRYAERWKPWRSYALLHIWYTE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -183647 for 2259 contacts (-81.3/contact) +
2D Compatibility (PS) -29636 + (NN) -11888 + (LL) 2604
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -240267.0 ( -106.36 by residue)
QMean score : 0.414
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