Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGAIERSGYTFQPEFSVVRQNGAIHVYHQGEFVEEIEFEF--NGEYPDHDLIEELVNHYCFEHEI
2NPB Chain:A ((41-77))
----------------TPQVTGFFEVTVAGKLV----HSKKRGDGYVDTESKFRKLV--------
General information:
TITO was launched using:
RESULT:
Template:
2NPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13156 for 154 contacts (-85.4/contact) +
2D Compatibility (PS) -3829 + (NN) -1448 + (LL) 2148
1D Compatibility (HY) 800 + (ID) 300
Total energy: -15785.0 ( -102.50 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_2NPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NPB-query.scw
PDB file :
Tito_Scwrl_2NPB.pdb
: