Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MKAV-QVRKAY--DLVTAEVKKPVLSKDDEVLVKVKRVGICGSDMHIYHGTNPLATL---PRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGRPNVCAKLSVFGVHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIGAQAVWRGQVEKGDTVLIQGAGPIGICVLKMAKLAGA-AVMMTDLNNERLAFAKENGADAVVNVQAEHVAERVLEWTGNEGANVVIDAVCLPETFALSIEAVSPAGHVVVLGFDERAAQI--SQLPITKK-EV-TITGSRLQTNQFPKVVELLNGGRLMHNGLVTHTF-SVDDVHHAFQFIKEHPDQVRKAVITFD 3GFB Chain:D ((5-336)) MQAIMKTKPAYGAELVEVDVPKP---GPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPI-AGRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADYVVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPREVTIDFNNLIIFKALEVHGITGRHLWETWY-TVSSLIQSGKLNLDPIITHKYKGFDKFEEAFELMR--------------

General information: TITO was launched using: RESULT: Template: 3GFB.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1817 -204677 -112.65 -639.61 target 2D structure prediction score : 0.51 Monomeric hydrophicity matching model chain D : 0.79 3D Compatibility (PKB) : -112.65 2D Compatibility (Sec. Struct. Predict.) : 0.51 1D Compatibility (Hydrophobicity) : 0.79 QMean score : 0.521

(partial model without unconserved sides chains): PDB file : Tito_3GFB.pdb: (Unconserved sides chains are recalculated) : Sequence: align-3GFB-query.scw PDB file : Tito_Scwrl_3GFB.pdb: