Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------MTETTENVVITIPDKTS---------------FTFHEAATSPSEGEEFVVGHFRELTVKISGSSTSR--EIKFYAVDENGEKTALSGTNKTDFQLGSSTLNTNEYWDF--DIAGLFKVMFEVVSVTGDVTVKGIVVS------
1JYT Chain:A ((1-163))MAEDGPQKQQLDMPLVLDQDLTKQMRLRVESLKQRGEKKQDGEKLLRPAESVYRLDFIQQQKLQFDHWNVVLDKPGKVTITGTSQNWTPDLTNLMTRQLLDPAAIFWRKEDSDAMDWNEADALEFGERLSDLAKIRKVMYFLITFGEGVEPANLKASVVFNQL


General information:
TITO was launched using:
RESULT:

Template: 1JYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 330 15190 46.03 128.73
target 2D structure prediction score : 0.37
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 46.03
2D Compatibility (Sec. Struct. Predict.) : 0.37
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.212

(partial model without unconserved sides chains):
PDB file : Tito_1JYT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JYT-query.scw
PDB file : Tito_Scwrl_1JYT.pdb: