Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------------------------------MKSAYIHIPFCEHICHYCDFNKYFIQSQPVDEYLNALEQEMINTIAKTGQPDLKTIFIGGGTPTSLSEEQLKKLMDMINRVLKPSSDLSEFAVEANPDDLSAEKLKILKEAGVNRLSFGVQTFEDDLLEKIGRVHKQKDVFTSFERAREIGFENISLDLMFGLPGQTLKHLEHSINTALSLDAEHYSVYSLIVEPKTVFYNLMQKGRLHLPPQEQEAEMYEIVMSKMEAHGIHQYEISNFAKAGMESKHNLTYWSNEQYFGFGAGAHGYIGGTRTVNVG--PVKHYIDLIAEKGFPYRDTHEVTTEEQIEEEMFLGLRKTAGVSKKRFAEKYGRSLDGLFPSVLKDLAEKGLIHNSESAVYLTHQGKLLGNEVFGAFLGEL
1R30 Chain:A ((27-338))RPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSR--YKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAA-WKNPHERDMPYLEQMVQGVKA-----MGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGL-GETVKDRAGLLLQLANLPTPPESVPINMLVKV-------KGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLS----AGREQ-----MNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQT---------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1R30.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1427 58108 40.72 214.42
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : 40.72
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.353

(partial model without unconserved sides chains):
PDB file : Tito_1R30.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1R30-query.scw
PDB file : Tito_Scwrl_1R30.pdb: