Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTTEKEMKQIQNEFKERMDEGELLNCMRCGF--CLPSCPTYIESGFQETHSPRGRIALMKAVADGMIEPDEDVERSLSLCLGCRACEPVCPSGVKYGQLLEEARDIIHQNKKHSLGERVMRKTAFHELFPHQNRMRSAVSLIGLYQRSGLQTAVRKSGMLRVLPEHLRTMEAVLPDVPKSKDMKHRPRFLPSIGPMKKRVAFFSGCLMDTMFLPTNNATLKLLQLAGCDIVIPPEQACCGALHGHSGEKNTGKELAKQNIAAFEALDVDAVITNAGGCGAFLTEYDHLLKDDPEWSERAAAFVQKLKDFSSVLVELDFHQMDLALETPQVVTYQDSCHL--RNVMHTSLEPRQLLKSIKGAEFKEMEKADSCCGSAGIYNIVEVEMSMKILDSKMAAVKATEAILIVTANPGCLLQMKLGIEREGLSGKVRAVHLADLLLEAAGHKTS----
4Z9N Chain:A ((9-328))ADTLSDVKAK--------------GFLQCGVNTGLLGFASPNDKG----EWSGFDVDYCRAVASAIFGDPTKVKFTP---LNAKERFTALQSG---------EVDVLIRNTTWT----ISRDTSLGLDFAGINYYDGQGFMINSKKLAGINSALQLSGA-SICVQAGTTTELNMADYFRANKMEYNPVVFEK---------------------------------------------------------------IEEANAAYDSGRCDAYTTDQSSLYGVRLALA-----NPDDHVILPEIISK-EPFGLTVRQGDARWADVVRWTHNALLNAEEYGITQANVEEMKKSDNPDIKRLLGAEADTKIGTDLGLDKDWVVKIIKGVGNYGEIFERNIGSGS-----------------PLKIAR-GLNA----------QWNKGGLQYGIPVR


General information:
TITO was launched using:
RESULT:

Template: 4Z9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1768 29235 16.54 93.70
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 16.54
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.198

(partial model without unconserved sides chains):
PDB file : Tito_4Z9N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Z9N-query.scw
PDB file : Tito_Scwrl_4Z9N.pdb: