Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIYPYKEHKPDIHPTAFIADNATITGDVVIGEQSSIWFSVVIRGDVAPTRIGNRVNIQDLSCLHQSPNKTLLIEDDATIGHQVTLHSAVIRKNALIGMGSIILDGAEIGEGAFIGAGSLVPPGKIIPPGHLAFGRPAKVIRPLTEEDRKDMQRIRSEYVEKGQYYKFLQQT
3VNP Chain:B ((2-171))MIYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSPNNPLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIREMERIRREYVEKGQYYKALQQ-


General information:
TITO was launched using:
RESULT:

Template: 3VNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1002 -117778 -117.54 -692.81
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain B : 0.92

3D Compatibility (PKB) : -117.54
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.92
QMean score : 0.575

(partial model without unconserved sides chains):
PDB file : Tito_3VNP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VNP-query.scw
PDB file : Tito_Scwrl_3VNP.pdb: