Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVVTAVGRRRGFAMPWVSTARSGAVMLANYSAGVCGRVSSPGLNVRKMCLKANTPGAVTWLDTPKRFLSTQTASRCMAVNSSDVVTGRIDPQVLHTPLNTDVDGYAHAMHSSINSGPLEYLPATFSVFPALGDVGDLGGGVGAATYALDRLSNMRSGACVGGGESPWRSLMT-----
4M4X Chain:A ((107-266))
------------------GSMLQEGEFLLQALNGFVLVVTADAL----------------------VFYASSTIQDYLGFQQSDVIHQSVYE-LIHTE---DRAEFQRQLHWALNPDNASFMERCFRCRLRCLLDNSSGFLAMNFQGRLKYLH--------GQNLPPQLALFAIATPL
General information:
TITO was launched using:
RESULT:
Template:
4M4X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45419 for 818 contacts (-55.5/contact) +
2D Compatibility (PS) -12591 + (NN) -2582 + (LL) 3380
1D Compatibility (HY) -7200 + (ID) 1050
Total energy: -65462.0 ( -80.03 by residue)
QMean score : -0.039
(partial model without unconserved sides chains):
PDB file :
Tito_4M4X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M4X-query.scw
PDB file :
Tito_Scwrl_4M4X.pdb
: