Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDECVVDAAAVVDALAGKGASAIVLRGLLKE-SISNAPHLLDAEVGHALRRAVLSDEISEEQARAALDALPYLIDNRYPHSPRLI---EYTWQL------RHNVTFYDALYVALATALDVPLLTGDSRLAAAPGLPCEIKLVR
4XGQ Chain:A ((1-130))
--MMVIDTSALVAMLSDE-PDAERFEAAVEADHIRLMSTASYLETALVIEARFGEP--GGRELDLWLH---RAAVDLVAVHADQADAARAAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVA-----
General information:
TITO was launched using:
RESULT:
Template:
4XGQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65767 for 903 contacts (-72.8/contact) +
2D Compatibility (PS) -13241 + (NN) -7802 + (LL) 1184
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -88026.0 ( -97.48 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_4XGQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XGQ-query.scw
PDB file :
Tito_Scwrl_4XGQ.pdb
: