Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASDFGPRIADLVEVAATRLPEAPALVVTADRIAISHRDLARLVDELAGQLTRSGLLPGDRVALRMGSNAEFVVALLAASRADLVVVPLDPALPITEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPNPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVMPLYHGHGLIASLLATLASGGAVSLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERSATEPS-GRKPAALRFIRSCSAPLTAQAALALQTEFAAPVVCAFGMTEATHQVTTTQIEGIDQTETPVVSTGLVGRSTGAQIRIVGSDGLPLPA---GAVGEIWLRGTTVVRGYLGDPTITAANFT-DGWLRTGDLGSLSAAGDLSIRGR-IKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPHQLYGEAVAAVIVPRESAPPTR-EELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRAVAERFGHSV |
3NYQ Chain:A ((156-491)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------DPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVR--HLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTE-TLMNTSVRADGEPRAGTVGVPL------PGVELRLV-----PIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPR------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NYQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -164824 for 2724 contacts (-60.5/contact) +
2D Compatibility (PS) -34192 + (NN) -10297 + (LL) 11356
1D Compatibility (HY) -15600 + (ID) 5600
Total energy: -219157.0 ( -80.45 by residue)
QMean score : 0.380
|
|
|