Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRSDTLATKLPWSDWLSRQRWYAGRNRELATVKPGVVVALRHNLDLVLVDVTYTDGATERYQVLVGWDFEPASEYGTKAAIGVADDRTGFDALYDVAGPQFLLSLIVSSAVCGTSTGEVTFTREPDVELPFAAQPRVCDAEQSNTSVIF---DRRAILKVFRRVS---SGINPDIELNRVLTRAGNPHVARLLGAYQFGRPNRSPTDALAYALGMVTEYEANA-AEGWAMATASVRDLFAEGDLYAHEVGGDFAGESYRLGEAVASVHATLADSLGTAQATFPVDRMLARLSSTVAVVPELREYAPTIEQQFQKLAA----EAITVQRVHGDLHLGQVLRTP-ESWLLIDFEGEPGQPLDERRAPDSPLRDVAGVLRSFEYAAYGPLVDQATDKQLAARAREWVERNRAAFCDGYAVASGIDPRDSALLLGAYELDKAVYETGYETRHRPGWLPIPLRSIARLTAS |
| 4R78 Chain:A ((40-275)) | -------------------------------------------------------------------------------------------------------------------------------------LSVEQL-GGMTNQNYLAKTTNKQYIVKFFGKGTEKLINRQDEKYNLELLKDLGL--DVKNYLFDI-------------EAGIKVNEYIESAITLD------S----------------TSIKTKFDKIAPILQTIHTSAKELRGEFAPFEEIKKYESLIEEQIP-YA----NYESVRNAVFSLEKRLADLGVDRKSCHIDLVPENFIESPQGRLYLIDWEY---------SSMNDPMWDLAALFLESEF----------------------TSQEEETFLSHYESDQTP--VS-HEKIAIYKILQDTIWSLWT--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R78.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60031 for 1649 contacts (-36.4/contact) +
2D Compatibility (PS) -23122 + (NN) 3620 + (LL) 14384
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -74649.0 ( -45.27 by residue)
QMean score : 0.246
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