Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDN-ARTARLTRLFATIVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCDAEHCP---AYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
1U6M Chain:A ((2-177))
--SLIRSATKEDGQAIARLVLVILKDMELP-ILEEVSEEQMIDLLAEATAY--PTYRYGYQRILVYEHAGEVAGIAVGYPAEDEKIID-E---PLREVFKKHGLAE--D---VRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTI---------------
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61925 for 1235 contacts (-50.1/contact) +
2D Compatibility (PS) -18024 + (NN) -8610 + (LL) 2244
1D Compatibility (HY) -5200 + (ID) 1450
Total energy: -92965.0 ( -75.28 by residue)
QMean score : 0.268
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: