Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS
3BDN Chain:A ((16-70))
---------------------------------------------------------------------------------------------------RRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKI---------------
General information:
TITO was launched using:
RESULT:
Template:
3BDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30126 for 293 contacts (-102.8/contact) +
2D Compatibility (PS) -5453 + (NN) -1132 + (LL) 8272
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -30839.0 ( -105.25 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3BDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDN-query.scw
PDB file :
Tito_Scwrl_3BDN.pdb
: