Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL--RAEGFDVHSVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGA-YGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVAN----SERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILANRLYVLPHAASRASIRRRFERIDRTFDEQAAEGWRH |
4YAG Chain:B ((5-264)) | -----GTTAFITGGASGIGFGIAQRLLANGARLVLADIRQDHLDEARQFFEERQQGRNVHTIRLDVSDRAQMAEAARECEAVMGGPDILINNAGIDPSGPFKDATYQDWDYGLAINLMGPINGIMAFTPGMRARGRGGHIVNTASLAGLTPMPSFMAIYATAKAAVITLTETIRDSMAEDNIGVTVLMPGPIKSRIHESGQNRPERFR-AGSGLAETEQQLAKRVVADNWMEPTEVGDMIVDAIVHNKLYVSTHGNWRETCEARFQ---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -162637 for 2181 contacts (-74.6/contact) +
2D Compatibility (PS) -26731 + (NN) -3034 + (LL) 960
1D Compatibility (HY) -15600 + (ID) 4450
Total energy: -211492.0 ( -96.97 by residue)
QMean score : 0.586
|
|
|