Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARASGASDYRSGELSHQDERGAAHMVDITEKATTKRTAVAAGILRTSAQVVALISTGGLPKGDALATARVAGIMAAKRTSDLIPLCHQLALTGVD--VDFTVGQLDIEITATVRSTDRTGVEMEALTAVSVAALTLYDMIKAVDPGALIDDIRVLHKEGGRRGTWTRR
3JQM Chain:H ((10-155))
----------------------RPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPLPLTGVEVRVELLKAEKRVRIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR-
General information:
TITO was launched using:
RESULT:
Template:
3JQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73231 for 1144 contacts (-64.0/contact) +
2D Compatibility (PS) -15286 + (NN) -7185 + (LL) 900
1D Compatibility (HY) -13600 + (ID) 3600
Total energy: -112002.0 ( -97.90 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_3JQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JQM-query.scw
PDB file :
Tito_Scwrl_3JQM.pdb
: