Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK-RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
1L2D Chain:A ((134-273))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGS------------FQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
1L2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68493 for 924 contacts (-74.1/contact) +
2D Compatibility (PS) -12981 + (NN) -6866 + (LL) 2072
1D Compatibility (HY) -6800 + (ID) 2300
Total energy: -95368.0 ( -103.21 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_1L2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2D-query.scw
PDB file :
Tito_Scwrl_1L2D.pdb
: