Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEPLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGRKVTIG
3DA8 Chain:B ((4-210))
---PLRVPPSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVADALAYGVKVTGATVHLVDA--DTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVAALATHGVTVVGRTATMGR-----
General information:
TITO was launched using:
RESULT:
Template:
3DA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168508 for 1685 contacts (-100.0/contact) +
2D Compatibility (PS) -23483 + (NN) -16455 + (LL) 652
1D Compatibility (HY) -26400 + (ID) 10250
Total energy: -244444.0 ( -145.07 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_3DA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DA8-query.scw
PDB file :
Tito_Scwrl_3DA8.pdb
: