Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MSKELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVMLHNHLETCFSTAVLDGHGQAAIEELIDAVKF-TPALTGPHARLGGAAVGESATEEPMPDASNM
2L9M Chain:A ((431-562))
GSHMLNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHDIIKQKTQIPLQARELIDTILVKGNAAANIFKNCLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQL
General information:
TITO was launched using:
RESULT:
Template:
2L9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30935 for 703 contacts (-44.0/contact) +
2D Compatibility (PS) -11631 + (NN) 2650 + (LL) 0
1D Compatibility (HY) 800 + (ID) 550
Total energy: -39666.0 ( -56.42 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_2L9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L9M-query.scw
PDB file :
Tito_Scwrl_2L9M.pdb
: