Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKGFKEFLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRIGVNAQSDVGILRIGIGGGQTIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLRKKGEVE-----QPGDTQVVLLTEIRDLLAQTNGDSPGRHGGRGTPSPTDGPRASTESQ
4Y7K Chain:A ((3-129))
LFSEFKEFLYEYKVIPLAIAFIMGIASTALIKSFVDNIIMPIITPFV--PGGGWETATVEL-GPIVISWGAFLGELVNFIIIAFAVFII-AKKVLQEEKVEKTKKVGIVDTTFARVDMASIAIKKLKELSP-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4Y7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45409 for 584 contacts (-77.8/contact) +
2D Compatibility (PS) -13103 + (NN) -8708 + (LL) -684
1D Compatibility (HY) -11600 + (ID) 1600
Total energy: -81104.0 ( -138.88 by residue)
QMean score : 0.164
(partial model without unconserved sides chains):
PDB file :
Tito_4Y7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y7K-query.scw
PDB file :
Tito_Scwrl_4Y7K.pdb
: