Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARQVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
1Y30 Chain:B ((5-147))
----VFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDDYRQAMVTDRRVLLTLPISHVYGLPPGMR
General information:
TITO was launched using:
RESULT:
Template:
1Y30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74878 for 1055 contacts (-71.0/contact) +
2D Compatibility (PS) -15885 + (NN) -13695 + (LL) 572
1D Compatibility (HY) -18400 + (ID) 7150
Total energy: -129436.0 ( -122.69 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1Y30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y30-query.scw
PDB file :
Tito_Scwrl_1Y30.pdb
: