Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAARD-TEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2GZM Chain:C ((6-266))
-------IGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYHSKMLNEGEE-QSDHLFLTTGKIGLFKEIASKWFGQPIENVKHIHLE---
General information:
TITO was launched using:
RESULT:
Template:
2GZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -243520 for 2366 contacts (-102.9/contact) +
2D Compatibility (PS) -28877 + (NN) -14253 + (LL) 348
1D Compatibility (HY) -26800 + (ID) 5000
Total energy: -318102.0 ( -134.45 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_2GZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GZM-query.scw
PDB file :
Tito_Scwrl_2GZM.pdb
: