Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTV-VRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTAPGSP
4QRH Chain:D ((9-179))
--------------------GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY--GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHL--------------IQSRINEARKEVEMMNLYDYVVVNDEVELA----------------
General information:
TITO was launched using:
RESULT:
Template:
4QRH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64647 for 1098 contacts (-58.9/contact) +
2D Compatibility (PS) -17046 + (NN) -6518 + (LL) 2248
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -104913.0 ( -95.55 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_4QRH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QRH-query.scw
PDB file :
Tito_Scwrl_4QRH.pdb
: