Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
2VI5 Chain:I ((11-160))
----PSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
2VI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117953 for 1259 contacts (-93.7/contact) +
2D Compatibility (PS) -16975 + (NN) -12653 + (LL) 168
1D Compatibility (HY) -18400 + (ID) 7500
Total energy: -173313.0 ( -137.66 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_2VI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VI5-query.scw
PDB file :
Tito_Scwrl_2VI5.pdb
: