Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMPLILLPAVDVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVRD
2Y85 Chain:C ((1-243))
-MPLILLPAVDVVEGRAVR----------EYGSAVDAALGWQRDGAEWIHLVDLDAAFGRGSNHELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAVR-
General information:
TITO was launched using:
RESULT:
Template:
2Y85.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169538 for 2065 contacts (-82.1/contact) +
2D Compatibility (PS) -25682 + (NN) -11638 + (LL) 628
1D Compatibility (HY) -30800 + (ID) 11650
Total energy: -248680.0 ( -120.43 by residue)
QMean score : 0.749
(partial model without unconserved sides chains):
PDB file :
Tito_2Y85.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y85-query.scw
PDB file :
Tito_Scwrl_2Y85.pdb
: