Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPATVLDSILEGVRADVAAREASVSLSEI--KAAAAAAPPPL-------DVMAALREPGIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDC---FARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPKPAR |
1VC4 Chain:B ((12-253)) | --------------------------LGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGLSVIAEVKRQSPSEGLIREV-DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGL-FDAVLIGTSLMRAPDLEAALRELV------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VC4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158514 for 1987 contacts (-79.8/contact) +
2D Compatibility (PS) -25004 + (NN) -7907 + (LL) 2116
1D Compatibility (HY) -20400 + (ID) 5700
Total energy: -215409.0 ( -108.41 by residue)
QMean score : 0.573
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