Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQPSPDSPAPLNVTVPFDSELGLQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAWLNSHGEGGSVVGVNNNTDFVRSISSGMVYGTAEPLHRGRRQQLWLVTITDDTDRVVARGQVRLQNLEARP
3R3D Chain:B ((16-148))
--PDVASHYPVAYEQTLDGTVGFVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAEMLASEATVAVV--HEKGMMAVGQSNHTSFFRPVKEGHVRAEAVRIHAGSTTWFWDVSLRDDAGRLCA---VSSMSIAVRP
General information:
TITO was launched using:
RESULT:
Template:
3R3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78249 for 1003 contacts (-78.0/contact) +
2D Compatibility (PS) -13661 + (NN) -5589 + (LL) 268
1D Compatibility (HY) -8400 + (ID) 2350
Total energy: -107981.0 ( -107.66 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_3R3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R3D-query.scw
PDB file :
Tito_Scwrl_3R3D.pdb
: