Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ
4U0H Chain:E ((8-188))
-------------LSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAG-AIYDT-VLAPCDIATYA---GAASGEFLLAAGTKGKRYALPHARIL-HQPLGGVT---ADIAIQAEQFAVIKKE-FRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH------
General information:
TITO was launched using:
RESULT:
Template:
4U0H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98342 for 1239 contacts (-79.4/contact) +
2D Compatibility (PS) -18917 + (NN) -8764 + (LL) 1916
1D Compatibility (HY) -22400 + (ID) 8400
Total energy: -154907.0 ( -125.03 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_4U0H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0H-query.scw
PDB file :
Tito_Scwrl_4U0H.pdb
: