Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MALRRRHEPDGWPFSQRSEKPNAVR--HAVRCSAVSAAASTANGTPVNW-VSGRVTRAMGVHRQTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH---------------
3HA4 Chain:A ((17-143))
EELEAQRQRHNDPRRPPWPLLHQRVVLLREGKGAPEDIALMWEQTKHYYPADWLIPLELTQVLKYSSGKYLQTYVADPDEMRKEVLM--QLLNVKYGRVSDPNGGRVNKDVEEIISMAVDDLENMDLNP
General information:
TITO was launched using:
RESULT:
Template:
3HA4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -986 for 705 contacts (-1.4/contact) +
2D Compatibility (PS) -11305 + (NN) -3291 + (LL) -128
1D Compatibility (HY) 400 + (ID) 900
Total energy: -16210.0 ( -22.99 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_3HA4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HA4-query.scw
PDB file :
Tito_Scwrl_3HA4.pdb
: