Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTALNRAVASARVGTEVIRVRGLTFRYPKAAEPAVRGMEFTVGRGEIFGLLGPSGAGKSTTQKLLIGLLRDHGGQATVWDKEPAEWGP----DYYERIGVSFELPNHYQKLTGYENLRFFASLYAGATADPMQ-----LLAAVGLADDAHTLVGKYSKGMQMRLPFARSLINDPELLFLDEPTSGLDPVNARKIKDIIVDLKARGRTIFLTTHDMATADELCDRVAFVVDGRIVALDSPTELKIARSRRRVRVEYRGDGGGLETAEFGMDGLADDPAFHSVLRNHHVETIHSREASLDDVFVEVTGRQLT |
4YMU Chain:A ((16-233)) | ---------------------------------VLKGVTLKVNKGEVVVIIGPSGSGKSTLLRC-INLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTR---------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4YMU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -93062 for 1637 contacts (-56.8/contact) +
2D Compatibility (PS) -22766 + (NN) -9546 + (LL) 6064
1D Compatibility (HY) -15200 + (ID) 3450
Total energy: -137960.0 ( -84.28 by residue)
QMean score : 0.506
|
|
|