Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSASRTMVSSGSEFESAVG-YSRAVRIGPLVVVAGT---TGSGD----DIAAQTRDALRRIEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQAFGKIRPVTSMVEVTALIAPGLLVEIEADAYVGSAVADRNSGAGPKDPSPAGG
1QD9 Chain:B ((11-123))
---------------AAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEV-ARLPKDALVEIEVIALV---------------------
General information:
TITO was launched using:
RESULT:
Template:
1QD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64389 for 731 contacts (-88.1/contact) +
2D Compatibility (PS) -11901 + (NN) -4063 + (LL) 320
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -91933.0 ( -125.76 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_1QD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QD9-query.scw
PDB file :
Tito_Scwrl_1QD9.pdb
: