Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSLD-LTGRTAIITGASRGIGLAIAQQLAAAGAHVVLTARRQEAADEAAAQVGDRAL---GVGAHAVDEDAARRCVDLTLERFGSVDILINNAGTNPAYGPLLEQDHARFAKIFDVNLWAPLMWTSLVVTAWMGEHGGAVVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSPR-IRVNAICPGVVRTRLAEALW--KDHEDPLAATIALGRIGEPADIASAVAFLVSDAASWITGETMIIDGGLLLGNALGFRAAPSTEH
3O4R Chain:C ((9-256))
--RRDPLANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGG-----------------
General information:
TITO was launched using:
RESULT:
Template:
3O4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173079 for 2066 contacts (-83.8/contact) +
2D Compatibility (PS) -25899 + (NN) -9679 + (LL) 1236
1D Compatibility (HY) -21200 + (ID) 4800
Total energy: -233421.0 ( -112.98 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3O4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4R-query.scw
PDB file :
Tito_Scwrl_3O4R.pdb
: