Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPTRSREEYFNLPLKVDESSGTIGKMFVLVIYDISDNRRRASLAKILAGFGY-RVQESAFEAMLTKGQLAKLVARIDRFAID----CD---NIRIYKIRGVA--AVTFYGRGRLVSAEEFVFF
2IVY Chain:A ((2-89))
------------------------AMLYLIFYDITDDNLRNRVAEFLKKKGLDRIQYSVFMGDLNSSRLKDVEAGLKIIGNRKKLQEDERFFILIVPITENQFRERIVIGYS-----------
General information:
TITO was launched using:
RESULT:
Template:
2IVY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61313 for 450 contacts (-136.3/contact) +
2D Compatibility (PS) -8825 + (NN) -5010 + (LL) 2376
1D Compatibility (HY) -7200 + (ID) 1100
Total energy: -81072.0 ( -180.16 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_2IVY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IVY-query.scw
PDB file :
Tito_Scwrl_2IVY.pdb
: