Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------MNEALIGLAFAAGLVAALNPCGFAMLPAYLLLVVYGQDSAGRTGPLSAVG----RAAAATVGMALGFLTV------------------------FGIFGALTISAATAVQRYLPYATVLIGLALIALGGWLLLGRG---LTALTPRSLGVR--WAPTVRLGSMYGYGISYAVASLSCTIGPFLAVTGAGLRGGSVVGSVAIYLAYVAGLTLVVGVLAVAAATASSALADRLRRILPFVNRISGA------LLVVVGLYV-----------GYYGLYEL--RLIAGVGANPQDAVIAAAGRLQGALAGWVNQHGAWP--------WAVLLVVLVVGAFAGTWFRRVRR----------------------------------------------------------- |
| 4P0G Chain:A ((7-435)) | APTALERVQKEGVLRVITRNSPATYFQDRNGETGFEYELAKRFAERLG-VELKIETADNLDDLYAQLSREGGPALAAAGLTPGREDDASVRYSHTYLDVTPQIIYRNGQQRPTRPEDLVGKRIMVLKGSSHAEQLAELKKQYPELKYEESDAVEVVDLLRMVDVGDIDLTLVDSNELAMNQVYFPNVRVAFDFGEARGLAWALPGGDDDSLMNEVNAFLDQAKKEGLLQRLKDRYYGHVDVLG--YVGAYTFAQHLQQRLPRYESHFKQSGKQLDTDWRLLAAIGYQESLWQPGATSKTGVRGLMMLTNRTAQAMGVSNR---LDPKQSIQGGSKYFVQIRSELPESIKEPDRSWFALAAYNIGGAHLEDARKMAEKEGLNPNKWLDVKKMLPRLAQKQWYAKTRYGYARGGETVHFVQNVRRYYDILTWVTQPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P0G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221392 for 1922 contacts (-115.2/contact) +
2D Compatibility (PS) -29051 + (NN) -2670 + (LL) 488
1D Compatibility (HY) -6400 + (ID) 2900
Total energy: -261925.0 ( -136.28 by residue)
QMean score : 0.117
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