Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGR--IEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
3N3A Chain:D ((24-150))
-------LVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGG------GTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQSDIENVRKGVTEFWQ------------
General information:
TITO was launched using:
RESULT:
Template:
3N3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116709 for 939 contacts (-124.3/contact) +
2D Compatibility (PS) -13569 + (NN) -5273 + (LL) 1180
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -154121.0 ( -164.13 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_3N3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3A-query.scw
PDB file :
Tito_Scwrl_3N3A.pdb
: