Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEVARS
1YK5 Chain:C ((4-53))
------WRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE----
General information:
TITO was launched using:
RESULT:
Template:
1YK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9971 for 290 contacts (-34.4/contact) +
2D Compatibility (PS) -5212 + (NN) -4196 + (LL) 792
1D Compatibility (HY) -3600 + (ID) 1400
Total energy: -23587.0 ( -81.33 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1YK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YK5-query.scw
PDB file :
Tito_Scwrl_1YK5.pdb
: