Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------MAKKDGAIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK------------------------------------------------
1D7Q Chain:A ((1-143))
PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKK-VWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI
General information:
TITO was launched using:
RESULT:
Template:
1D7Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41684 for 484 contacts (-86.1/contact) +
2D Compatibility (PS) -7827 + (NN) -1830 + (LL) 92
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -56499.0 ( -116.73 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_1D7Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D7Q-query.scw
PDB file :
Tito_Scwrl_1D7Q.pdb
: