Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFKVGDTVVYPHHGAALVEAIETRTIKGEQKEYLVLKVAQGDLTVRVPAENAEYVGVRDVVGQEGLDKVFQVLRAPHTEE--PTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAESTDDAKAETILDEVLAAAS
2LWJ Chain:A ((7-165))
-SFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLREIISEEDVKQVYSILKEKD-ISVDSTTWNRRYREYMEKIKTGSVFEIAEVLRDLYLLKGDKDLSFGERKMLDTARSLLIKELSLAKDCSEDEIESDLKKIFN---
General information:
TITO was launched using:
RESULT:
Template:
2LWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43893 for 1070 contacts (-41.0/contact) +
2D Compatibility (PS) -17125 + (NN) -4802 + (LL) 520
1D Compatibility (HY) -15200 + (ID) 2550
Total energy: -83050.0 ( -77.62 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_2LWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LWJ-query.scw
PDB file :
Tito_Scwrl_2LWJ.pdb
: