Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQG-KGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV
3SEF Chain:C ((29-298))
IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKK-DDGEILGDNTDGEGLVQDLLAQQ-VLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSA--------I-DPVIFSSRSVCYDMMYG------------------IDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLE--
General information:
TITO was launched using:
RESULT:
Template:
3SEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141313 for 2050 contacts (-68.9/contact) +
2D Compatibility (PS) -25977 + (NN) -9706 + (LL) 1592
1D Compatibility (HY) -26000 + (ID) 6850
Total energy: -208254.0 ( -101.59 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_3SEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SEF-query.scw
PDB file :
Tito_Scwrl_3SEF.pdb
: