Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MHRLLSDRARGWRRALCGIVLGLLAWSAHGVPAKAPQDLRIDGEVLPGRSIDLLEQALSRVKFNTDPQQLRRGLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDLGPYLRQPRALSAERLREVLAPRSRGLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLDLLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDYLWYRLARDGFG--PAERQ-GVRTLVRD-----KLVRHRYLHQ-IGLYSDFHHES-------DALRE---LAGKVSDKDAEAYYRRNLERYRNVAQVQAAHIRLADQA-----------SADKVYAELR-GGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDG---RLDLLRKTALIQKADTVSQPMRID-GAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVEGL |
| 3NRK Chain:A ((50-342)) | --------------------------------------------------------------------------------------------------------------------------------------------LNRVIATVGTVSISELDLDDATEKYNRLQKHLKHE----------------------DYRKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNRKQFEKTMETSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKV--GFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDP-ALRARRGMVEWISSFDLYKYSKIT-ATIAAPLPNGGVSEVFRDERKRYCILKIEGKRP----TPMENLRGGIQNILYRDKEEDTFHRWLKESRAEIPIQIF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22020 for 1668 contacts (-13.2/contact) +
2D Compatibility (PS) -28501 + (NN) -16730 + (LL) 12848
1D Compatibility (HY) -1200 + (ID) 1300
Total energy: -56903.0 ( -34.11 by residue)
QMean score : 0.341
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