Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVDMFIKIGDVKGESKDKTHAEEIDVLAWSWGMSQ--SGSMHMGGGGGAGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA
4W64 Chain:B ((16-164))
-----------VDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRA---KRIKYLQIKLKHVLVSSV-TPTVNEEGVPTEAFGLKYAAVEWTYNQ--------GAVTK-KWSLSNNTAS
General information:
TITO was launched using:
RESULT:
Template:
4W64.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28819 for 826 contacts (-34.9/contact) +
2D Compatibility (PS) -14274 + (NN) -1046 + (LL) 1068
1D Compatibility (HY) -8400 + (ID) 2450
Total energy: -53921.0 ( -65.28 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_4W64.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W64-query.scw
PDB file :
Tito_Scwrl_4W64.pdb
: