Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATVIDRHSQPTWRDFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVVDRRIDSIMARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGYAALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGH--------LSAEPLLLVLIIFAWTPPHFWALCIHRKDEYAKADIPMLPVTHGERYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALALGARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPLKLLL |
4OD4 Chain:A ((22-296)) | ------------------LVRIEHTIFSLPFAYVGALLSRYPF-----TLADAILMAAAVVGLRMAGMAYNNIADLDIDRLNPRTAKRPLVVGAVSLREAWALVAAGSAIYFASAALLN---TYALLLSPLVLAIALTYPHAKRLHPLPHLHLGIVLGSVVFGGAVAASGDEASSLGEVLRSVPWLYVAAVSLWVAGFDTIYSIMDIDFDRSHGLGSIPALLGPKGALAASLAMHAAAVALFIAGVEAYGLGAIATVSTALTALVIILVQAMAWLGRVKESFNLNLAVPIIIGAGIIVDML----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OD4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -281508 for 2260 contacts (-124.6/contact) +
2D Compatibility (PS) -27753 + (NN) -12068 + (LL) 2728
1D Compatibility (HY) -2000 + (ID) 2550
Total energy: -323151.0 ( -142.99 by residue)
QMean score : 0.344
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