Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQASSTDTPFV-IAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAGRMPRKLYASASSPLDGLID
4N6F Chain:B ((12-250))
--------EPWLKIGAREFRSRILVGIEQYDSVPLVRDVLNAAGADVFITTVDPDNRRSSLLLMDLADELPLDDFTWIGTTSFARTKESALRSARILRDSL-GIEILKLDVRGDDNT--PDNAGTVEAARELRAEGMELLPFILPDLATARALEEAGCAALRVMASPVASGRGIANPAAIRELIEQIGIPVVVEGGIGSARHVAEAMELGASATLVNTALVRAESPLLMAAAMRQAALAGLLSYESGPMPEVA-------------
General information:
TITO was launched using:
RESULT:
Template:
4N6F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168483 for 2053 contacts (-82.1/contact) +
2D Compatibility (PS) -27028 + (NN) -19622 + (LL) 1020
1D Compatibility (HY) -11600 + (ID) 4300
Total energy: -230013.0 ( -112.04 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_4N6F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6F-query.scw
PDB file :
Tito_Scwrl_4N6F.pdb
: