Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGPGLLNRPVLALAQRLCLATGSDQAYFLTSGAEANEAAIALARKWGRLHRGGAQR-IVSTVNSIHGRTPGTLTACGKPAQHGLEGFARVP-------FNDLDAMAAAIDEETVAVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQTGIGRCGALLAEELYGVRADIVTLGKGLGAGVPLSALLARGN-ACCFEPGDQLGTHHGNALMTAAGLAVLNTVLEPGFLEQVREQGTHLRDGLARVARRYG-HGPLRGQGLFWGLPL---IGQRAPAVVRAAFGEGLLINAPQPHCLRFSPALTVSRANVDEMLRRLERALARVANRHEEVA |
| 4ADD Chain:D ((26-402)) | ---------------------VRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYS--QDFAPLPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAAACEHFVS------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4ADD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238889 for 3244 contacts (-73.6/contact) +
2D Compatibility (PS) -39897 + (NN) -22220 + (LL) 2768
1D Compatibility (HY) -29600 + (ID) 7450
Total energy: -335288.0 ( -103.36 by residue)
QMean score : 0.518
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