Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEISHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGA---------VQPCGVGIFVWTTLLAYNPGKVAG------SPQGWADFWDVKKFPGKRG-----LRWGAKYSLEFALMADGVAPKDVYQTLATPAGVERAFRKLDELKPYIHWWKSGQDPVRDLADGTVVMSSAYNGRIAAAQA------EKQRLAMVWS--GGVYDFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYGPANRKAVGLLDPQVAA--NLPTAPQNMQNAVG-MNVAFWAEHGEALEQRFQNWAKR |
| 3TTM Chain:A ((6-345)) | --------------------DNKVLHVYNWSDYI----APDTLEKFTKETGIKVVYDVY-DSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPE-NIQKLKQCGVSFLDSPTEILPAALHYLGYKPDT-----DNPKELKAAEELFLKIRPYVTYFH-SSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDL--PAKTQRAMTRSWTKIKSG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TTM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -101644 for 2580 contacts (-39.4/contact) +
2D Compatibility (PS) -33428 + (NN) -11204 + (LL) 2996
1D Compatibility (HY) -17200 + (ID) 3000
Total energy: -163480.0 ( -63.36 by residue)
QMean score : 0.404
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