Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIQHRTQDAIRTLTAAFAPFDCLIQATRKGNFSFTIVDQHGV-ACHSERLYPEQY-----DDSGKMEEVINRVRKKTLAA
2GPI Chain:A ((13-68))
------------------------TWDVQLSAIHFTAQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQ
General information:
TITO was launched using:
RESULT:
Template:
2GPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7947 for 260 contacts (-30.6/contact) +
2D Compatibility (PS) -5188 + (NN) 701 + (LL) 2184
1D Compatibility (HY) -1200 + (ID) 400
Total energy: -11850.0 ( -45.58 by residue)
QMean score : 0.351
(partial model without unconserved sides chains):
PDB file :
Tito_2GPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GPI-query.scw
PDB file :
Tito_Scwrl_2GPI.pdb
: