Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASPAFMRFLPRCGAAAAFGTLLGLAGCQSWLDDRYADSLPPTSGVQPIKGLAQNVSIRRNALGMPLIETGTFHDALFALGYVHASDRLSQMVSLRLLAQGRLAEMVGPGALEIDRFMRTVNLRQAAEIQYRNASPRLQRFFEVYARGVNAYLYRYRDKLPMDLAQSGYRPEYWKPEDSALVFALLNFGLAVNLQEEIASLTLAQKVGSDKLAWLTPTYPDENLPFDEAEKLKGLRLDGQVPGLAGVEGAARQVAALSMLGVAASNNWAIAPQRSRSGKSLMANDTHLPLSMPSVWNYVQIRSPKYQAAGVSIAGLPGVVAGFNGKLAWGMTMVLGDNQDLYLEQLRRQGNRLYYLADGKWQPTRERQETFFIKGQRPIREVIHETRHGPLLNSALGERKNILQPLPLKSGYGLA--YRSIQQEADKTLDGFFDLSRAKTIEQAFDATREIRAMPLNIVFAD-EKHIGWQVTGRYPNRKEG-RGLLPSPGWDGRYDWDGYADPILHPSDQDPQQGWLGTANHRTVQPGYGAQLSNSWYYPERAERIAQLAGASKSHDTQSMIRMQYD--QTSLFVAKLQAMFDNPGMALPLRQAIDALPEAQRSRAREAYDRLMAFDGKL-----TASSSDAALYGAFLHESARQIFLDELGPEDGPAWKAFV--ET----ANLS--YSAQADH----LLGR-DDSPFWDDTRTPQKEDKPAILARSLAAAVEFCEQRLGSERKAWQWGK-LHTYEWQSDSSKMAPYLGAGERAGLGAIKGYLDRGPYPAGGDHTTLDVSAYGWGQDFDTWLIPAMRLIVDFGQSEPMIGVNSSGQSGNP-----ASPHYADGIDAWLKGRYVSFPFQPQNLDRVYGNKRLTLTPAR |
| 3K3W Chain:B ((1-545)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SNLWSTRPERVQEGSTVLINGPQFGWYNPAYTYGIGLHGAGFDVVGNTPFAYPIVLFGTNSEIAWGATAGPQDVVDIYQEKLNPS-RADQYWFNNAWRTMEQRKERIQVRGQADREMTIWRTVHGPVMQFDYD------------QGAAYSKKRSWDGYEV-QSLLAWLNVAKARNWTEFLDQASKMA-ISINWYYADKHGNIGYVSPAFLPQRPADQDIRVPAKGD-GSMEWLGIKSFDAIPKAYNPPQGYLVNWNNKPAPDKTN-TDTYYWTYGDRMNELVSQYQQKDLFSVQEIWEFNQKASYSDVNWRYFRPHLEK---------LAQQLP--ADDSSKAALTMLLAWDGMEQDQGGQNAGPARVLFKTWLEEMYKQVLMPVVPESHRAMYSQTGFATQQGPNPGSINLSMGTKVLLRALVLEAHPDPKRVNVF---GERSSQEIMHTALQNAQARLSQEQGAQMARWTMPTSVHRFSDKN-FT----------------------GTPQTMPGNTFAFT--------GYQNRGTENNRVVFDAKGV-EFCDAMPPGQSGFTDRNGVRSPHYEDQLKLYENFECKTMDVTHADIRRN-AQSSTMLLIQP |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K3W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96087 for 3849 contacts (-25.0/contact) +
2D Compatibility (PS) -55669 + (NN) -28346 + (LL) 21480
1D Compatibility (HY) -17200 + (ID) 4750
Total energy: -180572.0 ( -46.91 by residue)
QMean score : 0.314
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