Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIREILKMGDERLLRIAQPVPSELFGSEELQRLIDDMFETMHHVGGVGLAAPQIGVDLQLVIFGFERSERYPDAPAVPPTILLNPRVTPLDDEMEEGWEGCLSVPGLRGAVSRHRRIRYQGLDPQDSRSTAASKGSMRGWCSTSATT
1VEZ Chain:B ((2-135))
-VRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDH
General information:
TITO was launched using:
RESULT:
Template:
1VEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59582 for 900 contacts (-66.2/contact) +
2D Compatibility (PS) -14150 + (NN) -6564 + (LL) 208
1D Compatibility (HY) -12800 + (ID) 3250
Total energy: -96138.0 ( -106.82 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1VEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEZ-query.scw
PDB file :
Tito_Scwrl_1VEZ.pdb
: